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Goksel Misirli's Outputs (3)

libSBOLj3: a graph-based library for design and data exchange in synthetic biology. (2023)
Journal Article
Mısırlı, G. (2023). libSBOLj3: a graph-based library for design and data exchange in synthetic biology. Bioinformatics, 39(8), 3. https://doi.org/10.1093/bioinformatics/btad525

The Synthetic Biology Open Language version 3 data standard provides a graph-based approach to exchange information about biological designs. The new data model has major updates and offers several features for software tools. Here, we present libSBO... Read More about libSBOLj3: a graph-based library for design and data exchange in synthetic biology..

Not to be sniffed at: repurposing existing RNA-seq data to examine changes to human nasal microbiome composition in COVID-19 infection, compared to influenza and healthy controls (2023)
Journal Article
Wainwright, F., Misirli, G., & Andras, P. (2023). Not to be sniffed at: repurposing existing RNA-seq data to examine changes to human nasal microbiome composition in COVID-19 infection, compared to influenza and healthy controls. Microbiota in Health and Disease, 5(2), Article e845. https://doi.org/10.26355/mhd_20236_845

Objective: The human microbiome is essential in maintaining healthy physiology; compositional changes have been implicated in numerous physical and mental diseases. Thus far, COVID-19 microbiome research has focused primarily upon gut and lung bacter... Read More about Not to be sniffed at: repurposing existing RNA-seq data to examine changes to human nasal microbiome composition in COVID-19 infection, compared to influenza and healthy controls.

Synthetic biology open language (SBOL) version 3.1.0 (2023)
Journal Article
Buecherl, L., Mitchell, T., Scott-Brown, J., Vaidyanathan, P., Vidal, G., Baig, H., …Beal, J. (2023). Synthetic biology open language (SBOL) version 3.1.0. Journal of Integrative Bioinformatics, 20(1), 20220058. https://doi.org/10.1515/jib-2022-0058

Synthetic biology builds upon genetics, molecular biology, and metabolic engineering by applying engineering principles to the design of biological systems. When designing a synthetic system, synthetic biologists need to exchange information about mu... Read More about Synthetic biology open language (SBOL) version 3.1.0.