ShortBOL: A language for scripting designs for engineered biological systems using SyntheticBiology Open Language (SBOL).

Misirli

Abstract

The Synthetic Biology Open Language (SBOL) is an emerging synthetic biology data exchange standard, designed primarily for unambiguous and efficient machine-to-machine communication. However, manual editing of SBOL is generally difficult for non-trivial designs. Here, we describe ShortBOL, a light-weight SBOL scripting language that bridges the gap between manual editing, visual design tools, and direct programming. ShortBOL is a shorthand textual language developed to enable users to create SBOL designs quickly and easily, without requiring strong programming skills or visual design tools.

Citation

Misirli. (2020). ShortBOL: A language for scripting designs for engineered biological systems using SyntheticBiology Open Language (SBOL). ACS synthetic biology, 962-966. https://doi.org/10.1021/acssynbio.9b00470

• Acceptance Date: Mar 1, 2020
• Publication Date: Apr 17, 2020
• Journal: ACS Synthetic Biology
• Publisher: American Chemical Society
• Pages: 962-966
• DOI: https://doi.org/10.1021/acssynbio.9b00470
• Keywords: ShortBOL, scripting designs, engineered, biological systems, synthetic biology, open language.
• Publisher URL: https://pubs.acs.org/doi/10.1021/acssynbio.9b00470