RetroBioCat Database: A Platform for Collaborative Curation and Automated Meta-Analysis of Biocatalysis Data

Finnigan, William; Lubberink, Max; Hepworth, Lorna J.; Citoler, Joan; Mattey, Ashley P.; Ford, Grayson J.; Sangster, Jack; Cosgrove, Sebastian C.; da Costa, Bruna Zucoloto; Heath, Rachel S.; Thorpe, Thomas W.; Yu, Yuqi; Flitsch, Sabine L.; Turner, Nicholas J.

Abstract

Despite the increasing use of biocatalysis for organic synthesis, there are currently no databases that adequately capture synthetic biotransformations. The lack of a biocatalysis database prevents accelerating biocatalyst characterization efforts from being leveraged to quickly identify candidate enzymes for reactions or cascades, slowing their development. The RetroBioCat Database (available at retrobiocat.com) addresses this gap by capturing information on synthetic biotransformations and providing an analysis platform that allows biocatalysis data to be searched and explored through a range of highly interactive data visualization tools. This database makes it simple to explore available enzymes, their substrate scopes, and how characterized enzymes are related to each other and the wider sequence space. Data entry is facilitated through an openly accessible curation platform, featuring automated tools to accelerate the process. The RetroBioCat Database democratizes biocatalysis knowledge and has the potential to accelerate biocatalytic reaction development, making it a valuable resource for the community.

Citation

Finnigan, W., Lubberink, M., Hepworth, L. J., Citoler, J., Mattey, A. P., Ford, G. J., …Turner, N. J. (2023). RetroBioCat Database: A Platform for Collaborative Curation and Automated Meta-Analysis of Biocatalysis Data. ACS catalysis, 13(17), 11771-11780. https://doi.org/10.1021/acscatal.3c01418

• Journal Article Type: Article
• Acceptance Date: Aug 22, 2023
• Online Publication Date: Aug 22, 2023
• Publication Date: Sep 1, 2023
• Deposit Date: Jan 24, 2024
• Journal: ACS Catalysis
• Electronic ISSN: 2155-5435
• Publisher: American Chemical Society
• Peer Reviewed: Peer Reviewed
• Volume: 13
• Issue: 17
• Pages: 11771-11780
• DOI: https://doi.org/10.1021/acscatal.3c01418
• Keywords: Catalysis; General Chemistry
• Publisher URL: https://pubs.acs.org/doi/10.1021/acscatal.3c01418