Emotion Classification on Software Engineering Q&A Websites (2024)
Journal Article
Awovi Ahavi-Tete, D., & Sangeeta, S. (2025). Emotion Classification on Software Engineering Q&A Websites. e-Informatica Software Engineering Journal (EISEJ), 19(1), Article 250104. https://doi.org/10.37190/e-inf250104

Background: With the rapid proliferation of question-and-answer websites for software developers like Stack Overflow, there is an increasing need to discern developers’ emotions from their posts to assess the influence of these emotions on their prod... Read More about Emotion Classification on Software Engineering Q&A Websites.

Optimized punching shear design in steel fiber-reinforced slabs: Machine learning vs. evolutionary prediction models (2024)
Journal Article
Albostami, A. S., Mohamad, S. A., Alzabeebee, S., Al-Hamd, R. K., & Al-Bander, B. (2025). Optimized punching shear design in steel fiber-reinforced slabs: Machine learning vs. evolutionary prediction models. Engineering Structures, 322, Article 119150. https://doi.org/10.1016/j.engstruct.2024.119150

This research paper focuses on utilizing Artificial Neural Networks (ANN), Multi-Objective Genetic Algorithm Evolutionary Polynomial Regression (MOGA-EPR), and Gene Expression Programming (GEP) to predict the punching shear strength of Steel Fibre-Re... Read More about Optimized punching shear design in steel fiber-reinforced slabs: Machine learning vs. evolutionary prediction models.

Analytical and numerical study of anti-plane elastic wave scattering in a structured quadrant subjected to a boundary point load (2024)
Journal Article
Nieves, M., Kisil, A., & Mishuris, G. S. (in press). Analytical and numerical study of anti-plane elastic wave scattering in a structured quadrant subjected to a boundary point load. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 480(2299), Article 20240099. https://doi.org/10.1098/rspa.2024.0099

We verify the recently developed method by Kisil (Kisil 2024 SIAM J. Appl. Math. 84, 464–476 (doi: 10.1137/23M1562445)) through its application in the study of the anti-plane dynamic response of an elastic square-cell lattice quadrant having a free l... Read More about Analytical and numerical study of anti-plane elastic wave scattering in a structured quadrant subjected to a boundary point load.

Smoclust: synthetic minority oversampling based on stream clustering for evolving data streams (2023)
Journal Article
Chiu, C. W., & Minku, L. L. (2024). Smoclust: synthetic minority oversampling based on stream clustering for evolving data streams. Machine Learning, 113(7), 4671-4721. https://doi.org/10.1007/s10994-023-06420-y

Many real-world data stream applications not only suffer from concept drift but also class imbalance. Yet, very few existing studies investigated this joint challenge. Data difficulty factors, which have been shown to be key challenges in class imbal... Read More about Smoclust: synthetic minority oversampling based on stream clustering for evolving data streams.

Expedient, Affective, and Sustained Solidarities? Mediated Contestations of Islamophobia in the Case of Brexit, the Christchurch Terror Attack, and the COVID-19 Pandemic (2023)
Journal Article
Poole, E., Giraud, E. H., Richardson, J. E., & de Quincey, E. (2023). Expedient, Affective, and Sustained Solidarities? Mediated Contestations of Islamophobia in the Case of Brexit, the Christchurch Terror Attack, and the COVID-19 Pandemic. Social Media + Society, 9(3), 1-16. https://doi.org/10.1177/20563051231199452

This article advances research on mediated solidarity, by analyzing the contestation of Islamophobia on the social media platform Twitter, in the context of Brexit, the Christchurch terror attack, and the COVID-19 pandemic. Drawing on a unique longit... Read More about Expedient, Affective, and Sustained Solidarities? Mediated Contestations of Islamophobia in the Case of Brexit, the Christchurch Terror Attack, and the COVID-19 Pandemic.

libSBOLj3: a graph-based library for design and data exchange in synthetic biology. (2023)
Journal Article
Mısırlı, G. (2023). libSBOLj3: a graph-based library for design and data exchange in synthetic biology. Bioinformatics, 39(8), 3. https://doi.org/10.1093/bioinformatics/btad525

The Synthetic Biology Open Language version 3 data standard provides a graph-based approach to exchange information about biological designs. The new data model has major updates and offers several features for software tools. Here, we present libSBO... Read More about libSBOLj3: a graph-based library for design and data exchange in synthetic biology..

Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits (2021)
Journal Article
Yang, B., James, K., Wipat, A., & Misirli, G. (2021). Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits. ACS synthetic biology, 10(12), 3304-3315. https://doi.org/10.1021/acssynbio.1c00157

Engineering genetic regulatory circuits is key to the creation of biological applications that are responsive to environmental changes. Computational models can assist in understanding especially large and complex circuits for which manual analysis i... Read More about Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits.

Virtual Parts Repository 2: Model-driven design of genetic regulatory circuits (2021)
Preprint / Working Paper
Misirli. (2021). Virtual Parts Repository 2: Model-driven design of genetic regulatory circuits

<jats:title>Abstract</jats:title><jats:p>Engineering genetic regulatory circuits is key to the creation of biological applications that are responsive to environmental changes. Computational models can assist in understanding especially large and com... Read More about Virtual Parts Repository 2: Model-driven design of genetic regulatory circuits.