Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits (2021)
Journal Article
Yang, B., James, K., Wipat, A., & Misirli, G. (2021). Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits. ACS synthetic biology, 3304-3315. https://doi.org/10.1021/acssynbio.1c00157

Engineering genetic regulatory circuits is key to the creation of biological applications that are responsive to environmental changes. Computational models can assist in understanding especially large and complex circuits for which manual analysis i... Read More about Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits.

Explicit model for bending edge wave on an elastic orthotropic plate supported by the Winkler–Fuss foundation (2021)
Journal Article
Althobaiti, S. N., Nikonov, A., & Prikazchikov, D. (2021). Explicit model for bending edge wave on an elastic orthotropic plate supported by the Winkler–Fuss foundation. Journal of Mechanics of Materials and Structures, 16(4), 543 - 554. https://doi.org/10.2140/jomms.2021.16.543

The paper is concerned with a bending edge wave on a thin orthotropic elastic plate resting on a Winkler–Fuss foundation. The main focus of the contribution is on derivation of a specialised reduced model accounting for the contribution of the bendin... Read More about Explicit model for bending edge wave on an elastic orthotropic plate supported by the Winkler–Fuss foundation.

The Gaia-ESO Survey: Membership probabilities for stars in 63 open and 7 globular clusters from 3D kinematics (2021)
Journal Article
Wright, & Jeffries. (2021). The Gaia-ESO Survey: Membership probabilities for stars in 63 open and 7 globular clusters from 3D kinematics. Monthly Notices of the Royal Astronomical Society, https://doi.org/10.1093/mnras/stab3032

Spectroscopy from the final internal data release of the Gaia-ESO Survey (GES) has been combined with Gaia EDR3 to assign membership probabilities to targets observed towards 63 Galactic open clusters and 7 globular clusters. The membership probabili... Read More about The Gaia-ESO Survey: Membership probabilities for stars in 63 open and 7 globular clusters from 3D kinematics.

Post-bifurcation behaviour of elasto-capillary necking and bulging in soft tubes (2021)
Journal Article
Fu. (2021). Post-bifurcation behaviour of elasto-capillary necking and bulging in soft tubes. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 1-21. https://doi.org/10.1098/rspa.2021.0311

Previous linear bifurcation analyses have evidenced that an axially stretched soft cylindrical tube may develop an infinite-wavelength (localized) instability when one or both of its lateral surfaces are under sufficient surface tension. Phase transi... Read More about Post-bifurcation behaviour of elasto-capillary necking and bulging in soft tubes.

The changing face of AU Mic b: stellar spots, spin-orbit commensurability, and transit timing variations as seen by CHEOPS and TESS (2021)
Journal Article
Maxted. (2021). The changing face of AU Mic b: stellar spots, spin-orbit commensurability, and transit timing variations as seen by CHEOPS and TESS. Astronomy & Astrophysics, 654, Article A159

AU Mic is a young planetary system with a resolved debris disc showing signs of planet formation and two transiting warm Neptunes near mean-motion resonances. Here we analyse three transits of AU Mic b observed with the CHaracterising ExOPlanet Satel... Read More about The changing face of AU Mic b: stellar spots, spin-orbit commensurability, and transit timing variations as seen by CHEOPS and TESS.

OMEX metadata specification (version 1.2). (2021)
Journal Article
Nickerson, D., Waltemath, D., Gennari, J., König, M., Misirli, G., & Neal, M. (2021). OMEX metadata specification (version 1.2). Journal of Integrative Bioinformatics, https://doi.org/10.1515/jib-2021-0020

A standardized approach to annotating computational biomedical models and their associated files can facilitate model reuse and reproducibility among research groups, enhance search and retrieval of models and data, and enable semantic comparisons be... Read More about OMEX metadata specification (version 1.2)..

Modelling The Fitness Landscapes of a SCRaMbLEd Yeast Genome (2021)
Presentation / Conference
Misirli. (2021, October). Modelling The Fitness Landscapes of a SCRaMbLEd Yeast Genome. Presented at 2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)

Revisiting the Cygnus OB associations (2021)
Journal Article
Wright. (2021). Revisiting the Cygnus OB associations. Monthly Notices of the Royal Astronomical Society, 2370 - 2385. https://doi.org/10.1093/mnras/stab2663

OB associations play an important role in Galactic evolution, though their origins and dynamics remain poorly studied, with only a small number of systems analysed in detail. In this paper, we revisit the existence and membership of the Cygnus OB ass... Read More about Revisiting the Cygnus OB associations.

Elastic Surface Waves Induced by Internal Sources (2021)
Journal Article
Prikazchikov, D., Chevrychkina, A., Chorozoglou, A., & Khajiyeva, L. (2021). Elastic Surface Waves Induced by Internal Sources. Journal of Mathematical Sciences, 258, 545 - 552. https://doi.org/10.1007/s10958-021-05565-2

The paper is focused on the surface wave field induced by an internal time-harmonic point source embedded in the elastic half space. By using the superposition principle, we first analyze the disturbances caused by the embedded source in an unbounded... Read More about Elastic Surface Waves Induced by Internal Sources.

The ethics of shared Covid-19 risks: an epistemological framework for ethical health technology assessment of risk in vaccine supply chain infrastructures (2021)
Journal Article
Ani. (2021). The ethics of shared Covid-19 risks: an epistemological framework for ethical health technology assessment of risk in vaccine supply chain infrastructures. Health and Technology, 1083 - 1091. https://doi.org/10.1007/s12553-021-00565-3

<jats:title>Abstract</jats:title><jats:p>This article addresses the topic of shared responsibilities in supply chains, with a specific focus on the application of the Internet of Things (IoT) in e-health environments, and Industry 4.0 issues—concerni... Read More about The ethics of shared Covid-19 risks: an epistemological framework for ethical health technology assessment of risk in vaccine supply chain infrastructures.

Multi-Agent Deep Deterministic Policy Gradient Algorithm for Peer-to-Peer Energy Trading Considering Distribution Network Constraints (2021)
Journal Article
Samende, & Fan. (2021). Multi-Agent Deep Deterministic Policy Gradient Algorithm for Peer-to-Peer Energy Trading Considering Distribution Network Constraints. Astronomical Journal, https://doi.org/10.48550/arXiv.2108.09053

In this paper, we investigate an energy cost minimization problem for prosumers participating in peer-to-peer energy trading. Due to (i) uncertainties caused by renewable energy generation and consumption, (ii) difficulties in developing an accurate... Read More about Multi-Agent Deep Deterministic Policy Gradient Algorithm for Peer-to-Peer Energy Trading Considering Distribution Network Constraints.

Optical spectroscopy study of Eu-doped ions in BaAl2O4 phosphors (2021)
Journal Article
Rezende, M. D. S., Valerio, M., Araujo, R., Jackson, R., dos Santos Mattos, E., & dos Santos Junior, B. (2021). Optical spectroscopy study of Eu-doped ions in BaAl2O4 phosphors. Journal of Luminescence, 1-5. https://doi.org/10.1016/j.jlumin.2021.118011

Computational and experimental methodology is employed to study optical properties in Eu-doped BaAl2O4 phosphors. The symmetry and detailed geometry of the Eu-dopant site, predicted by atomistic simulation, are used to calculate the crystal field par... Read More about Optical spectroscopy study of Eu-doped ions in BaAl2O4 phosphors.

Transmission spectroscopy with VLT FORS2: a featureless spectrum for the low-density transiting exoplanet WASP-88b (2021)
Journal Article
Spyratos, P., Nikolov, N., Southworth, J., Constantinou, S., Madhusudhan, N., Carter, A. L., …Mikal-Evans, T. (2021). Transmission spectroscopy with VLT FORS2: a featureless spectrum for the low-density transiting exoplanet WASP-88b. Monthly Notices of the Royal Astronomical Society, 506(2), 2853-2870. https://doi.org/10.1093/mnras/stab1847

We present ground-based optical transmission spectroscopy of the low-density hot Jupiter WASP-88b covering the wavelength range 4413 - 8333 Å with the FORS2 spectrograph on the Very Large Telescope. The FORS2 white light curves exhibit a significant... Read More about Transmission spectroscopy with VLT FORS2: a featureless spectrum for the low-density transiting exoplanet WASP-88b.

Asymptotic analysis of multi-layered waveguides with contrast parameters (2021)
Thesis
Alkinidri, M. O. S. (2021). Asymptotic analysis of multi-layered waveguides with contrast parameters. (Thesis). Keele University

The research is investigating anti-plane shear of a strongly inhomogeneous dynamic asymmetric laminate. Two types of contrast are considered, including those for composite structures with thick or thin stiff outer layers. In all types of contrast, th... Read More about Asymptotic analysis of multi-layered waveguides with contrast parameters.

Asymptotic models for surface waves in coated elastic solids (2021)
Thesis
Mubaraki, A. M. A. (2021). Asymptotic models for surface waves in coated elastic solids. (Thesis). Keele University

This thesis deals with surface wave propagation in elastic solids. It develops further the methodology of asymptotic hyperbolic-elliptic models for the surface elastic waves, aiming at two main areas, namely, accounting for the effects of a thin coat... Read More about Asymptotic models for surface waves in coated elastic solids.

A Wronskian method for elastic waves propagating along a tube (2021)
Journal Article
Chapman, & Sorokin, S. (2021). A Wronskian method for elastic waves propagating along a tube. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 1-19. https://doi.org/10.1098/rspa.2021.0202

A technique involving the higher Wronskians of a differential equation is presented for analysing the dispersion relation in a class of wave propagation problems. The technique shows that the complicated transcendental-function expressions which occu... Read More about A Wronskian method for elastic waves propagating along a tube.

Five-Wave Resonances in Deep Water Gravity Waves: Integrability, Numerical Simulations and Experiments (2021)
Journal Article
(2021). Five-Wave Resonances in Deep Water Gravity Waves: Integrability, Numerical Simulations and Experiments. Fluids, 1-35. https://doi.org/10.3390/fluids6060205

In this work we consider the problem of finding the simplest arrangement of resonant deep-water gravity waves in one-dimensional propagation, from three perspectives: Theoretical, numerical and experimental. Theoretically this requires using a normal... Read More about Five-Wave Resonances in Deep Water Gravity Waves: Integrability, Numerical Simulations and Experiments.

Identification of metallic objects using spectral MPT signatures: object characterisation and invariants (2021)
Journal Article
Ledger, P. D., Wilson, B. A., Amad, A. A. S., Amas, A., & Lionheart, W. R. B. (2021). Identification of metallic objects using spectral MPT signatures: object characterisation and invariants. International Journal for Numerical Methods in Engineering, 122(15), 3941-3984. https://doi.org/10.1002/nme.6688

The early detection of terrorist threat objects, such as guns and knives, through improved metal detection, has the potential to reduce the number of attacks and improve public safety and security. To achieve this, there is considerable potential to... Read More about Identification of metallic objects using spectral MPT signatures: object characterisation and invariants.

On meso-scale approximations for vibrations of membranes with lower-dimensional clusters of inertial inclusions (2021)
Journal Article
Maz′ya, V., Movchan, A., & Nieves, M. (2021). On meso-scale approximations for vibrations of membranes with lower-dimensional clusters of inertial inclusions. St. Petersburg Mathematical Journal, 32(3), 551 - 564. https://doi.org/10.1090/spmj/1661

Formal asymptotic algorithms are considered for a class of meso-scale approximations for problems of vibration of elastic membranes that contain clusters of small inertial inclusions distributed along contours of predefined smooth shapes. Effective t... Read More about On meso-scale approximations for vibrations of membranes with lower-dimensional clusters of inertial inclusions.

Post-buckling of an elastic half-space coated by double layers (2021)
Journal Article
Fu. (2021). Post-buckling of an elastic half-space coated by double layers. Mathematics and Mechanics of Solids, https://doi.org/10.1177/10812865211010886

We investigate the buckling and post-buckling properties of a hyperelastic half-space coated by two hyperelastic layers when the composite structure is subjected to a uniaxial compression. In the case of a half-space coated with a single layer, it is... Read More about Post-buckling of an elastic half-space coated by double layers.